To do a proper job everything needs cleaning imo. Clean the EGR, Inlet manifold and the inlet ports. its time consuming, as you have to go to each cylinder, get it to TDC so both valves are closed, clean the carbon out and then blow ALL the loose stuff away with an air line. Then you have to go to the turbo side, give that a clean up. Then the intercooler should really be cleaned out to prevent any more oil residue coming back along.
Id then do the CCV mod, to take away the oil vapors, and either turn the EGR right down, or take away the VAC feed. which may or may not bring on CEL, my ASV engine doesnt bring on CEL after removing the connector to the N18 valve so id assume if i block the VAC feed to it, CEL wouldnt appear, but im yet to try this.
Carrying out both of those will see a dramatic improvement imo. obvously, if the CCV and EGR are left, then the oil/soot will build back up in time and need to be re-done.