I got my cupra tdi custom mapped about 3 weeks and it does the exact same thing.
Giving it the beans in 3rd, changing at 4k rpm, there is a slight hesitation in 4th at about 3k (where the gear change leaves it) before it picks up and accelerates again.
Anyone else get this, know a solution? (spoke to the mapper, he's gonna take a look, but was surprised, because the power graphs were lovely & it revs smoothly and powerfully the rest off the time)